STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94664.1Conserved hypothetical protein; Localized in the cytoplasm. (50 aa)    
Predicted Functional Partners:
rpmG
Ribosomal protein L33 is one of the proteins from the large ribosomal subunit (50S); L33 has been shown to be on the surface of 50S subunit; Belongs to the ribosomal protein L33p family; Localized in the cytoplasm; High confidence in function and specificity.
   
 
 0.971
rpmB
Ribosomal protein L28 is a part of the large subunit (50S) of the ribosome; RpmB interacts with the proteins RplQ (L17) and RpmF (L32); Belongs to the ribosomal protein L28p family; Localized in the cytoplasm; High confidence in function and specificity.
   
 
 0.970
rpmF
The ribosomal protein L32 is part of the large subunit (50S) of the ribosome; Belongs to the ribosomal protein L32p family; Localized in the cytoplasm; High confidence in function and specificity.
  
 
   0.892
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
   0.892
rpmC
Ribosomal protein L29 is one of the proteins that surrounds the polypeptide exit tunnel on the outside of the 50S ribosomal subunit; Contacts protein L23, trigger factor and protein nascent chains; Belongs to the Ribosomal protein L29p/L35e family; Localized in the cytoplasm; High confidence in function and specificity.
  
 
   0.891
rpmA
Ribosomal protein L27 is part of the large ribosomal subunit (50S). It cross-links to the 23S rRNA and to the A and P site tRNAs. RpmA is essential for ribosome function, but its exact role is unclear; Belongs to the ribosomal protein L27p family; Localized in the cytoplasm; High confidence in function and specificity.
  
 
   0.888
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
    
   0.873
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.873
rplY
Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
    
   0.873
rpsP
Ribosomal protein S16 is one of the proteins from the 30S ribosomal subunit; In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity; Belongs to the ribosomal protein S16p family; Localized in the cytoplasm; High confidence in function and specificity.
    
   0.873
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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