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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94079.1The N-Acetyltransferases catalyze the transfer of an acetyl group from acetyl-CoA to a substrate molecule; Belongs to Gcn5 or GNAT actyltransferase family; Localized in the cytoplasm; Family membership. (174 aa)    
Predicted Functional Partners:
speB
Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine; Adopts a 3-layer alpha-beta-alpha fold; Binds a manganese ion; Belongs to the arginase family; Localized in the cytoplasm; High confidence in function and specificity.
     
 0.903
CAZ95265.1
FAD-dependent amine oxidoreductase of unknown substrate specificity; Belongs to the amine oxydase family; Localized in the cytoplasm; Specificity unclear.
     
  0.900
mltG
Conserved hypothetical periplasmic protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
       0.820
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.
       0.820
CAZ94077.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplamic space; Conserved hypothetical protein.
 
    0.598
recD
Exodeoxyribonuclease V, alpha chain; The Exonuclease V is a multifunctional nuclease required for efficient DNA repair. It catalyzes the unwinding of double-stranded DNA and the cleavage of single-stranded DNA and it stimulates local genetic recombination. All of these activities require concomitant hydrolysis of ATP; Belongs to the helicase family, UvrD subfamily; Localized in the cytoplasm; High confidence in function and specificity.
  
    0.533
degP
Peptidase Do, family S1; Peptidase Do is a heat shock protein which is required for bacterial growth at elevated temperatures. It is involved in the degradation of damaged proteins. Belongs to the family 1 of the serine peptidase. Displays a catalytic triad His, Asp and Ser. Contains a C-terminal PDZ domain. Features an uncleaved signal peptide. Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.530
rncA
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.499
CAZ98676.1
Transcriptional regulator with a helix-turn-helix DNA-binding motif located in the N-terminal part. The C-terminal part may contain an oligomerization domain; Belongs to the Cro/C1-type transcriptional regulator family; Localized in the cytoplasm; Family membership.
  
     0.417
CAZ97832.1
TPR repeats protein; Conserved protein containing three C-terminal tetratrico peptide repeats (TPRs). TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a transmembrane helix in the N-terminal region; Localized in the cytoplasmic membrane; Function unclear.
  
     0.401
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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