STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94702.1Thrombospondin type 3 repeats protein; The presence of two EF-hand calcium-binding domains, four putatif thrombospondin type 3 repeats and one calx-beta motif suggest that this sequence is a calcium binding protein. The calx-beta motif is present in the cytoplasmic domains of Calx Na-Ca exchangers; Contains a Galactose-binding domain; Signal peptide cleaved between the residues 34 and 35; Putatively localized in the outer membrane; Conserved hypothetical protein. (2111 aa)    
Predicted Functional Partners:
CAZ94703.1
Conserved hypothetical protein; Contains a signal peptide cleaved between the residues 29 and 30; Localized in the periplasmic space.
 
     0.873
pts
6-Pyruvoyl tetrahydrobiopterin synthase is involved in the biosynthesis of tetrahydrobiopterin, an essential cofactor of aromatic amino acid hydroxylases. It catalyzes the transformation of 7,8-dihydroneopterin triphosphate into 6-pyruvoyl tetrahydropterin. It forms a homohexamer formed of two homotrimers in a head to head fashion. Localized in the cytoplasm; High confidence in function and specificity.
       0.746
idiA
Isopentenyl-diphosphate Delta-isomerase is involved in isoprenoid biosynthesis. It catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl to its highly electrophilic allylic isomer, dimethylallyl diphosphate. Binds one magnesium as a cofactor when the substrate is also bound. Localized in the cytoplasm; High confidence in function and specificity.
       0.746
CAZ96912.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.714
CAZ94710.1
Conserved hypothetical protein; Contains a signal peptide cleaved between the residues 29 and 30; Localized in the periplasmic space.
  
     0.701
CAZ96561.1
Conserved hypothetical protein; Signal peptide cleaved between the residues 28 and 29; Localized in the periplasm.
  
     0.677
CAZ94709.1
OmpA-like outer membrane protein; This protein has a modular architecture with two N-terminal TPR repeats, a central beta-propeller domain, encompassing five WD40 repeats, and a C-terminal OmpA domain. OmpA-like domain is thought to be responsible for non-covalent interactions with peptidoglycan. The tetratrico peptide repeat (TPR) is a structural motif, which mediates proteinprotein interactions. Signal peptide cleaved between the residues 21 and 22; Localized in the outer membrane; Function unclear.
  
 
   0.672
CAZ97786.1
Conserved hypothetical protein; Signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space.
  
     0.659
pmiA
Mannose-6-phosphate isomerase or phosphomannose isomerase (PMI) is the enzyme that converts the mannose-6-phosphate to fructose-6-phosphate. Contains a phosphomannose isomerase type I domain; Binds 1 zinc ion per subunit; Belongs to the the cupin superfamily, mannose-6-phosphate isomerase type 1 family; Localized in the cytoplasm; High confidence in function and specificity.
       0.649
CAZ97043.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.648
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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