STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoXSigma-54 modulation protein; Probably modulates the activity of sigma-54 factor; Belongs to the sigma-54 modulation protein/ribosomal protein S30EA family; Localized in the cytoplasm; Function unclear. (100 aa)    
Predicted Functional Partners:
rpmC
Ribosomal protein L29 is one of the proteins that surrounds the polypeptide exit tunnel on the outside of the 50S ribosomal subunit; Contacts protein L23, trigger factor and protein nascent chains; Belongs to the Ribosomal protein L29p/L35e family; Localized in the cytoplasm; High confidence in function and specificity.
  
 
 
 0.902
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
   0.901
rpsP
Ribosomal protein S16 is one of the proteins from the 30S ribosomal subunit; In addition to being a ribosomal protein, S16 also has a cation-dependent endonuclease activity; Belongs to the ribosomal protein S16p family; Localized in the cytoplasm; High confidence in function and specificity.
  
 
 
 0.894
rpmG
Ribosomal protein L33 is one of the proteins from the large ribosomal subunit (50S); L33 has been shown to be on the surface of 50S subunit; Belongs to the ribosomal protein L33p family; Localized in the cytoplasm; High confidence in function and specificity.
 
 
   0.889
rplQ
Ribosomal protein L17 is one of the proteins from the 50S ribosomal subunit; Belongs to a ribosomal proteins L17b/YmL8 (yeast) family; Localized in the cytoplasm; High confidence in function and specificity.
 
 
   0.880
rpmA
Ribosomal protein L27 is part of the large ribosomal subunit (50S). It cross-links to the 23S rRNA and to the A and P site tRNAs. RpmA is essential for ribosome function, but its exact role is unclear; Belongs to the ribosomal protein L27p family; Localized in the cytoplasm; High confidence in function and specificity.
   
 
 0.879
rpsI
The ribosomal protein S9 is a part of the ribosomal small subunit (30S) that contributes to the structural integrity of the ribosome; Belongs to the ribosomal protein S9p/S16e family; Localized in the cytoplasm; High confidence in function and specificity.
   
 
 0.878
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.874
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.873
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.872
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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