STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94729.1Conserved hypothetical protein; Localized in the cytoplasm. (437 aa)    
Predicted Functional Partners:
CAZ94725.1
Conserved hypothetical membrane protein; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.786
CAZ94728.1
Conserved hypothetical membrane protein; Contains a transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.719
mthK
This channel transports potassium ion in response to intracellular calcium ion binding. Eight RCK domains (regulators of K+ conductance) form a gating ring at the intracellular membrane surface. The gating ring uses the free energy of Ca2+ binding in a simple manner to perform mechanical work to open the pore. This channel is a homotetramer and the monomer subunit features three transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.619
dprA
The protein Smf (or DprA) would be a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation; Localized in the cytoplasm; High confidence in function and specificity.
 
     0.572
CAZ95245.1
Competence proteins are essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. This competence protein features eleven transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
  
     0.558
glpE1
Thiosulfate sulfurtransferase catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide; The relatively low affinity of GlpE for both thiosulfate and cyanide suggests that these compounds are not the physiological substrates. Thioredoxin 1 or related dithiol proteins could instead be the physiological sulfur-acceptor substrate; Contains one only rhodanese domain; Localized in the cytoplasm; High confidence in function and specificity.
       0.496
CAZ96975.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.452
CAZ97811.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.427
CAZ94726.1
Sodium / alanine symporter; This permease transports alanine in association with sodium ions. It forms a channel through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions. Features eleven transmembrane helices. Localized in the cytoplasmic membrane; High confidence in function and specificity.
       0.417
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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