STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94748.1Conserved protein containing two PASTA domains (Pbp And Serine/Threonine kinase Associated domains). Such domains bind the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine. PASTA domain adopts a small globular fold consisting of 3 beta-sheets and an alpha-helix; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Family membership. (195 aa)    
Predicted Functional Partners:
rluD
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.824
ftsQ
Possible cell division protein ftsQ; This hypothetical protein could be the FtsQ protein involved in septum formation. Could interact with ftsZ, ftsA, and penicillin binding protein 3. The function of FtsQ is unknown; Contains a N-terminal transmembrane segment; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
  
 0.756
CAZ96508.1
Contains 13 transmembrane segments; Integral cytoplasmic membrane protein; Conserved hypothetical protein.
  
     0.725
CAZ97848.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 20 and 21; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.722
CAZ95215.1
Conserved hypothetical lipoprotein; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 19 and 20; Localized in the outer and/or cytoplasmic membrane; Conserved hypothetical protein.
  
     0.697
ddlA
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.682
CAZ96608.1
This membrane protein seems involved in the insertion of outer membrane proteins. It has two domains. The C-terminal part, a beta-barrel pore-forming region inserted in the outer membrane, is a Bacterial surface antigen (D15) domain. The N-terminal part, exposed in the periplasm, and involved in gating of the pore and binding of the substrate proteins consists of four Surface antigen variable number repeats; Belongs to the surface antigen D15 family; Signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Family membership.
  
     0.674
CAZ98902.1
Conserved hypothetical protein. Localized in the cytoplasm.
 
     0.674
CAZ97832.1
TPR repeats protein; Conserved protein containing three C-terminal tetratrico peptide repeats (TPRs). TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a transmembrane helix in the N-terminal region; Localized in the cytoplasmic membrane; Function unclear.
 
     0.652
CAZ95666.1
Conserved protein belonging to the family DUF177; Localized in the cytoplasm; Family membership.
 
     0.640
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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