STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94774.1Conserved hypothetical membrane protein; Contains one transmembrane segment; Probably localized in the cytoplasmic membrane; Conserved hypothetical protein. (252 aa)    
Predicted Functional Partners:
CAZ94773.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
 
 
 0.955
CAZ95899.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.718
CAZ94776.1
RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership.
  
 
 0.693
CAZ95390.1
Hypothetical membrane protein; Contains a C-terminal transmembrane segment; Probably localized in the cytoplasmic membrane; Hypothetical protein.
  
     0.684
CAZ98905.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.674
CAZ96487.1
Conserved hypothetical membrane protein; Contains 4 transmembrane segmemts; Probably localised in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.649
CAZ96141.1
Conserved hypothetical protein; Contains a signal peptide cleaved between the residues 18 and 19; Localized in the periplasmic space.
  
     0.642
CAZ95992.1
Conserved hypothetical membrane protein; Contains two transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.584
CAZ95477.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.581
CAZ94775.1
Putative exported protein; Signal peptide putatively cleaved between the residues 19 and 20; Probably localized in the periplasmic space; Hypothetical protein.
       0.577
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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