STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94787.1Flavastacin, family M12; Flavastacin is a zinc metallendopeptidase that hydrolyzes polypeptides on the amino-side of Asp in -Xaa-|-Asp-. Acts very slowly on -Xaa-|-Glu. Displays a o-glycosylation consisting of a Man, GlcNAc, GlcU, Glc, GlcU, Rha, Man heptasaccharide; Belongs to the family M12 of the peptidases; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 32 and 33; Localized in the outer membrane; High confidence in function and specificity. (358 aa)    
Predicted Functional Partners:
CAZ95072.1
Glycoside hydrolase, family GH18; Glycoside hydrolase with an unknown substrate specificity. It is a modular enzyme displaying a N-terminal catalytic module belonging to the family 18 of the glycoside hydrolases (GH18) and two C-terminal carbohydrate binding modules belonging to the family 5 of the carbohydrate binding modules that mainly bind to the cellulose and chitin; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; Specificity unclear.
  
 
   0.658
CAZ98461.1
Beta-helix fold protein; Conserved protein adopting a parallel beta-helix fold. Features a signal peptide cleaved between the residues 27 and 28. Localized in the periplasm; Conserved hypothetical protein.
  
 
   0.597
CAZ94998.1
Conserved hypothetical protein including an N-terminal region rich in glycine, reminiscent of the collagen triple helix repeats (GxxG). Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 23 and 24; Localized in the outer membrane.
  
     0.509
CAZ94786.1
The major facilitator superfamily (MFS) transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Features twelve transmembrane helices. Localized in the cytoplasmic membrane; Family membership.
       0.486
CAZ97219.1
Conserved hypothetical protein; Putatively localized in the cytoplasmic membrane via a transmembrane segment.
  
     0.481
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.458
CAZ96139.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.420
CAZ94993.1
TPR repeats protein; Conserved protein containing three N-terminal tetratrico peptide repeats (TPRs) and a C-terminal conserved domain of unknown function. TPR repeats mediate proteinprotein interactions and the assembly of multiprotein complexes; Contains a C-terminal transmembrane helix; Localized in the cytoplasmic membrane; Function unclear.
 
    0.417
traM
TraM is part of a conjugative transposon and is predicted to be involved in its transfer; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Function unclear.
  
     0.411
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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