STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94923.1Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein. (287 aa)    
Predicted Functional Partners:
CAZ94922.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (22-105) and the Plug module acting as a channel gate; The signal peptide is cleaved between the residues 19 and 20; Specificity unclear.
 
     0.912
CAZ96841.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; Contains a carboxypeptidase regulatory domain (29-112) and the Plug module (acting as a channel gate; The signal peptide is cleaved between the residues 25 and 26; Family membership.
 
     0.783
dgkA1
Deoxyguanosine kinase plays an essential role in generating the deoxyribonucleotide precursors, dGTP and dATP, for DNA metabolism. Localized in the cytoplasm; High confidence in function and specificity.
 
     0.609
CAZ97817.1
Conserved hypothetical lipoprotein; Contains a lipoprotein signal peptide cleaved between the residues 15 and 16; Localized in the outer membrane; Conserved hypothetical protein.
  
     0.530
CAZ97650.1
SusD/RagB family lipoprotein; Protein probably involved in nutrient binding and belonging to the SusD/RagB family; Gene very often associated with a gene encoding for a TonB-dependent receptor or transducer; Contains a lipoprotein signal peptide cleaved between the residues 21 and 22; Probably localized in the outer membrane; Family membership.
  
     0.502
CAZ98635.1
Putative membrane lipoprotein; Lipoprotein signal peptide cleaved between the residues 19 and 20; Putatively localized in the outer membrane; Hypothetical protein.
  
     0.468
CAZ96440.1
Conserved hypothetical membrane protein; Contains two N-terminal transmembrane segments; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.458
CAZ96795.1
Hypothetical membrane protein; Contains three N-terminal and one C-terminal transmembrane segments; Localized in the cytoplasmic membrane; Hypothetical protein.
  
     0.419
CAZ97189.1
It is not clear if this protein of unknown function is a lipoprotein localized in the outer membrane or protein exported in the pepriplasmic space.
  
     0.419
CAZ97649.1
TonB-dependent Receptor; Protein localized in the outer membrane involved in uptake of macromolecules (here, possibly sulphated sugars) that are too large to diffuse via the outer membrane porins channels or are encountered at very low concentrations; This sequence does not contain of carboxypeptidase regulatory domain. The Plug module (111- 221) acts as a channel gate; The signal peptide is cleaved between the residues 20 and 21; Family membership.
  
     0.415
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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