STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ94982.1D-Tagatose 3-epimerase catalyzes the epimerization of various ketohexoses at the C3 position. It folds into a Xylose isomerase-like TIM barrel. Localized in the cytoplasm; High confidence in function and specificity. (281 aa)    
Predicted Functional Partners:
CAZ94981.1
Conserved protein containing a putative lipoprotein signal peptide cleaved between the residues 15 and 16; Possibly localized in the outer membrane; Conserved hypothetical protein.
 
     0.918
CAZ97310.1
NAD(P)-dependent oxidoreductase belonging to the GFO/IDH/MOCA family; Adopts a Rossmann fold; Localized in the cytoplasm; Specificity unclear.
 
    0.790
CAZ97307.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.738
CAZ97303.1
Cytochrome c-containing lipoprotein; Large conserved protein containing a C-terminal cytochrome C. Cytochromes c typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 24 and 25; Localized in the outer membrane; Conserved hypothetical protein.
 
     0.683
CAZ94984.1
Large conserved protein containing a C-terminal cytochrome c. Cytochromes c typically function in electron transfer, but c-type cytochrome centers are also found in the active sites of many enzymes. Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 14 and 15; Localized in the outer membrane; Family membership.
 
     0.639
CAZ97305.1
Conserved hypothetical protein; Localized in the cytoplasm.
 
     0.593
CAZ97306.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.584
CAZ97304.1
Conserved protein belonging to the DUF1080 family; Contains a N-terminal transmembrane helix; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
     0.571
CAZ94983.1
The AraC-type transcriptional regulators are usually involved in the positive regulation of catabolic, metabolic and transport operons; Contains a C-terminal AraC-type HTH DNA-binding domain involved in the binding of the protein to the operator sequences in the DNA and a N-terminal domain presumed to interact with effector molecules and may be involved in dimerization; Localized in the cytoplasm; Family membership.
 
    0.537
CAZ97309.1
Conserved protein belonging to the Xylose isomerase-like TIM barrel family; Localized in the cytoplasm; Family membership.
 
     0.530
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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