STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95034.1Conserved hypothetical protein; Localized in the cytoplasm. (224 aa)    
Predicted Functional Partners:
CAZ98092.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 21 and 22; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.636
CAZ96636.1
Conserved hypothetical protein; Signal peptide cleaved between the residues 28 and 29; Possibly localized in the outer membrane.
  
     0.621
CAZ95454.1
Conserved hypothetical protein; Localized in the cytoplasm.
  
     0.578
CAZ95459.1
Conserved hypothetical membrane protein; Contains an uncleavable signal sequence; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
  
     0.576
CAZ95455.1
Hypothetical protein. Putatively localized in the cytoplasm.
  
     0.529
CAZ95033.1
The Crp/Fnr-type transcriptional regulators complexe with cyclic AMP and bind to operator sites near the promoter with a C-terminal HTH domain to regulate the transcription of several catabolite-sensitive operons; They predominantly act as transcription activators, but can also be important repressors, and respond to diverse intracellular and exogenous signals; Localized in the cytoplasm; Family membership.
       0.529
CAZ95457.1
Conserved hypothetical periplasmic protein; Contains a signal peptide cleaved between the residues 25 and 26; Localized in the periplasmic space; Conserved hypothetical protein.
  
     0.493
CAZ95458.1
This conserved protein contains five type-III fibronectin (FN3) domains. Structures of individual FN3 domains have revealed a conserved beta sandwich fold with one beta sheet containing four strands and the other sheet containing three strands; Localized in the cytoplasm; Family membership.
  
     0.487
CAZ94992.1
Serine peptidase, family S8; Serine peptidase contains a catalytic triad in the order Asp, His and Ser in the sequence. Its structure consists of three layers with a seven-stranded beta sheet sandwiched between two layers of helices; Belongs to the family S8 of peptidases; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 17 and 18; Localized in the cytoplasmic membrane; Specificity unclear.
  
     0.484
CAZ97042.1
Conserved hypothetical protein; Contains several Single hybrid motifs found in biotinyl/lipoyl-carrier proteins and domains, where the biotin and lipoic acid moieties act as covalently attached coenzyme in various enzymes; Signal peptide cleaved between the residues 23 and 24; Putatively localized in the cytoplasmic membrane.
  
     0.479
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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