STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAZ95038.1LemA family protein; Conserved protein belonging to the LemA family. LemA contains an amino terminal domain predicted as transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain; Localized in the cytoplasmic membrane; Family membership. (199 aa)    
Predicted Functional Partners:
CAZ95040.1
Conserved protein belonging to the DUF477 family; Contains one C-terminal transmembrane segment; Contains a signal peptide cleaved between the residues 19 and 20; Localized in the cytoplasmic membrane; Conserved hypothetical protein.
 
    0.953
CAZ95039.1
Conserved protein belonging to the DUF477 family; Localized in the cytoplasm; Family membership.
 
     0.911
CAZ95340.1
Conserved protein belonging to the DUF477 family; Contains three transmembrane helices in the C-terminal region; Signal peptide cleaved between the residues 19 and 20; Localized in the cytoplasmic membrane; Family membership.
 
    0.785
CAZ95037.1
Transcriptional regulator belonging to the MerR family. Contains a N-terminal helix-turn-helix DNA binding motif; Forms a dimer; Localized in the cytoplasm; Specificity unclear.
       0.648
CAZ95036.1
Peptidase family M23 mainly contains endopeptidases that lyze bacterial cell wall peptidoglycans. One catalytic zinc ion is bound per peptidase molecule. The cation ligands occur in the conserved motifs HXXXD and HXH. The first histidine of the second motif is also involved in the catalysis. Features a transmembrane helix in N-terminus. Localized in the cytoplasmic membrane; Specificity unclear.
       0.554
CAZ95041.1
Hypothetical protein; Putatively localized in the cytoplasm.
       0.504
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.459
Your Current Organism:
Zobellia galactanivorans
NCBI taxonomy Id: 63186
Other names: CCUG 47099, CIP 106680, Cytophaga drobachiensis, DSM 12802, Flavobacterium droebachense, Pseudomonas droebachense, Z. galactanivorans, Zobellia galactanivorans corrig. Barbeyron et al. 2001, Zobellia galactanovorans, strain Dsij
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