node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
YPO2749 | b0023 | YPO2749 | YPO0472 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.740 |
YPO2749 | eryA | YPO2749 | YPO0211 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.795 |
YPO2749 | nusE | YPO2749 | YPO0209 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.746 |
YPO2749 | rplI | YPO2749 | YPO3536 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.769 |
YPO2749 | rplW | YPO2749 | YPO0212 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.740 |
YPO2749 | rplY | YPO2749 | YPO1264 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. | 0.777 |
YPO2749 | rpmB | YPO2749 | YPO0050 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | Similar to Escherichia coli 50S ribosomal protein L28 RpmB SW:RL28_ECOLI (P02428) (77 aa) fasta scores: E(): 1.1e-32, 92.2% id in 77 aa; Belongs to the bacterial ribosomal protein bL28 family. | 0.742 |
YPO2749 | rpsG | YPO2749 | YPO0201 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.759 |
YPO2749 | rpsN | YPO2749 | YPO0222a | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.776 |
YPO2749 | rpsl | YPO2749 | YPO0200 | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.760 |
b0023 | YPO2749 | YPO0472 | YPO2749 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | Similar to Escherichia coli hypothetical protein YfcN SW:YFCN_ECOLI (P77458) (183 aa) fasta scores: E(): 0,71.0% id in 176 aa, and to Vibrio cholerae hypothetical protein VC2119 TR:Q9KQ82 (EMBL:AE004285) (186 aa) fasta scores: E(): 0, 58.1% id in 167 aa; Belongs to the UPF0115 family. | 0.740 |
b0023 | eryA | YPO0472 | YPO0211 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.990 |
b0023 | nusE | YPO0472 | YPO0209 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.991 |
b0023 | rplI | YPO0472 | YPO3536 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.974 |
b0023 | rplW | YPO0472 | YPO0212 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.983 |
b0023 | rplY | YPO0472 | YPO1264 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. | 0.991 |
b0023 | rpmB | YPO0472 | YPO0050 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | Similar to Escherichia coli 50S ribosomal protein L28 RpmB SW:RL28_ECOLI (P02428) (77 aa) fasta scores: E(): 1.1e-32, 92.2% id in 77 aa; Belongs to the bacterial ribosomal protein bL28 family. | 0.996 |
b0023 | rpsG | YPO0472 | YPO0201 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.991 |
b0023 | rpsN | YPO0472 | YPO0222a | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.982 |
b0023 | rpsl | YPO0472 | YPO0200 | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.992 |