STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YPO3033Similar to Escherichia coli hypothetical protein YaiI SW:YAII_ECOLI (P52088) (152 aa) fasta scores: E(): 0,74.2% id in 151 aa, and to Vibrio cholerae hypothetical protein VC0881 TR:Q9KTM1 (EMBL:AE004172) (149 aa) fasta scores: E(): 0, 67.1% id in 146 aa; Belongs to the UPF0178 family. (152 aa)    
Predicted Functional Partners:
hemF
Coproporphyrinogen III oxidase, aerobic HemF; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
  
    0.815
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
  
    0.568
rnpA
Ribonuclease P protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.497
YPO3031
Putative acetyltransferase; Similar to Campylobacter jejuni streptothricin acetyltransferase homolog Sat TR:Q9RGZ9 (EMBL:AF093219) (148 aa) fasta scores: E(): 1.5e-08, 33.6% id in 116 aa,and to Escherichia coli hypothetical protein TR:P76539 (EMBL:AE000330) (178 aa) fasta scores: E(): 0, 78.0% id in 141 aa; Belongs to the acetyltransferase family. YpeA subfamily.
  
    0.427
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.