STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05878.1PFAM: ABC-2 type transporter; KEGG: ate:Athe_0112 ABC-type Na+ efflux pump permease component-like protein. (401 aa)    
Predicted Functional Partners:
ADQ05879.1
KEGG: ate:Athe_0113 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.997
ADQ05880.1
KEGG: ate:Athe_0115 hypothetical protein.
       0.625
ADQ05882.1
KEGG: csc:Csac_2498 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.604
ADQ05883.1
KEGG: ate:Athe_0118 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
       0.588
ADQ05881.1
KEGG: ate:Athe_0116 hypothetical protein.
       0.573
ADQ05884.1
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: ate:Athe_2395 CMP/dCMP deaminase zinc-binding.
       0.405
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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