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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ06526.1KEGG: bha:BH1295 hypothetical protein; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin. (182 aa)    
Predicted Functional Partners:
ADQ06527.1
TIGRFAM: phage holin, LL-H family; KEGG: tte:TTE2423 hypothetical protein.
       0.774
ADQ06525.1
PFAM: protein of unknown function DUF1267; KEGG: cbi:CLJ_B1844 hypothetical protein.
       0.718
ADQ08263.1
PFAM: Rhomboid family protein; KEGG: ate:Athe_2713 rhomboid family protein.
  
   0.671
ADQ06516.1
KEGG: dae:Dtox_4246 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
  
 0.443
cinA
KEGG: ate:Athe_0985 competence/damage-inducible protein CinA; TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; Belongs to the CinA family.
 
     0.443
ADQ06520.1
PFAM: Baseplate J family protein; KEGG: gym:GYMC10_5392 baseplate J family protein.
  
    0.436
ADQ06519.1
KEGG: gym:GYMC10_5393 hypothetical protein.
  
    0.429
ADQ06521.1
KEGG: dhd:Dhaf_4813 hypothetical protein.
       0.426
ADQ06517.1
KEGG: ere:EUBREC_2093 hypothetical protein.
       0.425
ADQ06518.1
KEGG: dae:Dtox_4248 hypothetical protein.
       0.425
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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