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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ06533.1KEGG: csc:Csac_0656 hypothetical protein. (476 aa)    
Predicted Functional Partners:
ADQ06531.1
KEGG: ate:Athe_1027 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.598
ADQ06532.1
KEGG: ate:Athe_1028 protein of unknown function DUF820.
       0.598
ADQ06534.1
PFAM: protein of unknown function DUF820; KEGG: ate:Athe_2598 protein of unknown function DUF820.
       0.529
ADQ07085.1
KEGG: ate:Athe_1356 hypothetical protein.
  
     0.501
ADQ06535.1
KEGG: csc:Csac_2745 hypothetical protein; Belongs to the 'phage' integrase family.
       0.493
ADQ08025.1
PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: csc:Csac_0177 formylmethanofuran dehydrogenase, subunit E region.
  
     0.406
ADQ08292.1
PFAM: Colicin V production protein; KEGG: ate:Athe_2747 hypothetical protein.
  
     0.405
ADQ06804.1
KEGG: ate:Athe_1673 hypothetical protein.
  
     0.403
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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