STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ06628.1KEGG: ate:Athe_1880 hypothetical protein. (146 aa)    
Predicted Functional Partners:
ADQ06627.1
PFAM: Type II secretion system F domain; KEGG: ate:Athe_1882 type II secretion system protein.
 
  
 0.954
ADQ06625.1
KEGG: csc:Csac_1060 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
 
 
 0.942
ADQ06629.1
KEGG: csc:Csac_1065 peptidase A24A domain-containing protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV.
 
  
 0.922
ADQ06626.1
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: csc:Csac_1061 twitching motility protein; SMART: AAA ATPase.
 
  
 0.798
ADQ06633.1
KEGG: ate:Athe_1875 Tfp pilus assembly protein ATPase PilM-like protein.
 
  
 0.792
ADQ06630.1
PFAM: Late competence development protein ComFB; KEGG: csc:Csac_1066 hypothetical protein.
  
    0.776
ADQ06631.1
KEGG: ate:Athe_1877 hypothetical protein.
  
  
 0.691
ADQ06632.1
KEGG: ate:Athe_1876 hypothetical protein.
       0.638
ADQ06635.1
KEGG: ate:Athe_1873 hypothetical protein.
  
  
 0.606
ADQ06593.1
KEGG: ate:Athe_1921 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
  
 0.560
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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