Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ07856.1KEGG: csc:Csac_0656 hypothetical protein. (476 aa)    
Predicted Functional Partners:
ADQ07857.1
KEGG: ate:Athe_0520 hypothetical protein.
       0.501
ADQ07858.1
KEGG: ate:Athe_0519 hypothetical protein.
       0.501
ADQ07085.1
KEGG: ate:Athe_1356 hypothetical protein.
  
     0.498
ADQ08025.1
PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: csc:Csac_0177 formylmethanofuran dehydrogenase, subunit E region.
  
     0.405
ADQ08292.1
PFAM: Colicin V production protein; KEGG: ate:Athe_2747 hypothetical protein.
  
     0.405
ADQ06804.1
KEGG: ate:Athe_1673 hypothetical protein.
  
     0.401
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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