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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ07861.1PFAM: PSP1 domain protein; KEGG: ate:Athe_0516 PSP1 domain protein. (295 aa)    
Predicted Functional Partners:
rny
Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.891
ADQ07862.1
KEGG: ate:Athe_0515 DNA-directed DNA polymerase.
  
   0.865
ADQ07863.1
PFAM: protein of unknown function DUF327; KEGG: ate:Athe_0514 protein of unknown function DUF327.
  
  
 0.832
ADQ07864.1
PFAM: protein of unknown function DUF970; KEGG: ate:Athe_0513 protein of unknown function DUF970.
  
    0.707
ADQ07866.1
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ate:Athe_0511 Orn/Lys/Arg decarboxylase major region.
  
    0.657
fliE
KEGG: ate:Athe_2174 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE.
   
   0.547
ADQ05948.1
PFAM: Flagellar protein FlgJ-like; KEGG: ate:Athe_2336 hypothetical protein.
    
   0.542
ADQ06331.1
PFAM: flagellar hook capping protein; KEGG: ate:Athe_2166 flagellar hook capping protein.
    
   0.542
ADQ07562.1
PFAM: MCP methyltransferase CheR-type; KEGG: ate:Athe_0833 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type.
    
   0.542
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.538
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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