STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ07869.1TIGRFAM: spore coat assembly protein SafA; PFAM: SCP-like extracellular; Peptidoglycan-binding lysin domain; KEGG: ate:Athe_0508 spore coat assembly protein SafA; SMART: Peptidoglycan-binding LysM. (203 aa)    
Predicted Functional Partners:
ADQ07061.1
PFAM: inner-membrane translocator; KEGG: ate:Athe_1386 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
    
   0.704
ADQ07868.1
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.520
ADQ08082.1
KEGG: pjd:Pjdr2_4054 S-layer domain protein; PFAM: S-layer domain protein; Carbohydrate binding family 6; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; Parallel beta-helix repeat.
 
     0.452
ADQ06017.1
KEGG: ate:Athe_2581 hypothetical protein.
   
    0.438
ADQ07021.1
KEGG: ate:Athe_1434 hypothetical protein.
   
    0.438
ADQ06682.1
PFAM: cell wall hydrolase SleB; KEGG: ate:Athe_1793 cell wall hydrolase SleB.
 
     0.435
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.