STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ07996.1Transcriptional regulator, LacI family; KEGG: csc:Csac_1171 alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (327 aa)    
Predicted Functional Partners:
ADQ07995.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ate:Athe_0344 oxidoreductase domain protein.
       0.535
ADQ07997.1
PFAM: major facilitator superfamily MFS_1; KEGG: ate:Athe_0342 major facilitator superfamily MFS_1.
     
 0.522
ADQ07994.1
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: csc:Csac_1173 xylose isomerase domain-containing protein.
  
    0.457
ADQ07998.1
TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: ate:Athe_0341 anaerobic ribonucleoside-triphosphate reductase activating protein; SMART: Elongator protein 3/MiaB/NifB.
  
    0.442
ADQ07177.1
KEGG: ate:Athe_1266 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region.
    
 
 0.440
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.