STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ08080.1KEGG: cbt:CLH_1875 sigma-70, region 4 family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR. (68 aa)    
Predicted Functional Partners:
ADQ08204.1
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0511 putative signal transduction histidine kinase.
 
 
 0.831
ADQ08285.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS fold domain protein; PAS fold-3 domain protein; KEGG: ate:Athe_2740 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; extracellular solute-binding protein family 3; PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.776
ADQ08081.1
KEGG: csc:Csac_2452 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
     
 0.648
ADQ08115.1
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: aoe:Clos_0999 diguanylate cyclase/phosphodiesterase; SMART: GGDEF domain containing protein; EAL domain protein; CBS domain containing protein.
  
  
 0.524
ADQ06278.1
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: ate:Athe_2238 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
  
 
 0.520
ADQ08079.1
PFAM: coagulation factor 5/8 type domain protein; Carbohydrate binding family 6; KEGG: pjd:Pjdr2_3944 coagulation factor 5/8 type domain protein.
       0.515
ADQ08082.1
KEGG: pjd:Pjdr2_4054 S-layer domain protein; PFAM: S-layer domain protein; Carbohydrate binding family 6; Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; Parallel beta-helix repeat.
       0.465
ADQ06945.1
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ate:Athe_1511 diguanylate cyclase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein.
  
 
 0.439
Your Current Organism:
Caldicellulosiruptor hydrothermalis
NCBI taxonomy Id: 632292
Other names: C. hydrothermalis 108, Caldicellulosiruptor hydrothermalis 108, Caldicellulosiruptor hydrothermalis DSM 18901, Caldicellulosiruptor hydrothermalis str. 108, Caldicellulosiruptor hydrothermalis strain 108
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