STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ40499.1KEGG: ate:Athe_0999 hypothetical protein. (179 aa)    
Predicted Functional Partners:
ADQ40500.1
PFAM: Protein of unknown function DUF2273; KEGG: ate:Athe_1000 hypothetical protein.
 
     0.942
ADQ40498.1
PFAM: protein of unknown function DUF322; KEGG: ate:Athe_0998 protein of unknown function DUF322.
 
     0.773
ADQ40497.1
KEGG: ate:Athe_0997 hypothetical protein.
 
    0.755
ADQ40945.1
KEGG: ate:Athe_1458 hypothetical protein.
  
     0.733
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.731
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.711
ADQ40504.1
PFAM: Polyprenyl synthetase; KEGG: ate:Athe_1004 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.705
ADQ40496.1
KEGG: ate:Athe_0996 hypothetical protein.
 
     0.704
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.700
ADQ40494.1
PFAM: Sporulation stage III protein AE; KEGG: ate:Athe_0994 hypothetical protein.
 
    0.653
Your Current Organism:
Caldicellulosiruptor kristjanssonii
NCBI taxonomy Id: 632335
Other names: C. kristjanssonii I77R1B, Caldicellulosiruptor kristjanssonii DSM 12137, Caldicellulosiruptor kristjanssonii I77R1B, Caldicellulosiruptor kristjanssonii str. I77R1B, Caldicellulosiruptor kristjanssonii strain I77R1B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.