STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ41972.1KEGG: csc:Csac_0078 CRISPR-associated RAMP Csm4 family protein; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324. (336 aa)    
Predicted Functional Partners:
ADQ41971.1
KEGG: ate:Athe_2700 CRISPR-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324.
 
 
 0.995
ADQ41973.1
KEGG: csc:Csac_0077 CRISPR-associated RAMP Csm3 family protein; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324.
 
 
 0.993
ADQ41974.1
KEGG: csc:Csac_0076 CRISPR-associated Csm2 family protein; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: CRISPR-associated protein TM1810 domain protein.
 
 
 0.991
ADQ41975.1
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: csc:Csac_0075 CRISPR-associated Csm1 family protein.
 
 
 0.985
ADQ42019.1
KEGG: cth:Cthe_2051 CRISPR-associated Csm3 family protein; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324.
 
 
 0.902
ADQ41987.1
PFAM: protein of unknown function DUF324; KEGG: tit:Thit_1356 protein of unknown function DUF324.
 
 
 0.861
ADQ41970.1
KEGG: csc:Csac_0080 hypothetical protein.
       0.835
ADQ42017.1
PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_2049 hypothetical protein.
  
 
 0.812
ADQ42018.1
PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_2050 CRISPR-associated Csm3 family protein.
  
 
 0.812
ADQ42022.1
PFAM: protein of unknown function DUF324; KEGG: cth:Cthe_2054 hypothetical protein.
  
 
 0.812
Your Current Organism:
Caldicellulosiruptor kristjanssonii
NCBI taxonomy Id: 632335
Other names: C. kristjanssonii I77R1B, Caldicellulosiruptor kristjanssonii DSM 12137, Caldicellulosiruptor kristjanssonii I77R1B, Caldicellulosiruptor kristjanssonii str. I77R1B, Caldicellulosiruptor kristjanssonii strain I77R1B
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