STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ03806.1KEGG: csc:Csac_0184 hypothetical protein. (186 aa)    
Predicted Functional Partners:
comB
PFAM: 2-phosphosulfolactate phosphatase; KEGG: ate:Athe_0305 2-phosphosulfolactate phosphatase; Belongs to the ComB family.
       0.782
ADQ03808.1
KEGG: ate:Athe_0308 hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease.
 
     0.722
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.689
ADQ03983.1
KEGG: ate:Athe_0542 hypothetical protein.
  
     0.687
ADQ03982.1
KEGG: ate:Athe_0541 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.
  
     0.630
ADQ05212.1
PFAM: Fibronectin type III domain protein; KEGG: ate:Athe_1944 fibronectin type III domain protein.
  
     0.609
ADQ03809.1
PFAM: Radical SAM domain protein; KEGG: ate:Athe_0309 radical SAM domain protein.
       0.603
ADQ04130.1
KEGG: ate:Athe_0688 hypothetical protein.
  
     0.597
ADQ05692.1
PFAM: ABC-2 type transporter; KEGG: csc:Csac_0514 ABC-2 type transporter.
  
     0.565
ADQ04051.1
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: ate:Athe_0602 DNA binding domain protein, excisionase family.
  
     0.552
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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