Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ03810.1PFAM: LmbE family protein; KEGG: ate:Athe_0312 LmbE family protein. (487 aa)    
Predicted Functional Partners:
ADQ04999.1
PFAM: Polynucleotide adenylyltransferase region; KEGG: ate:Athe_1710 tRNA adenylyltransferase.
  
  
 0.820
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
  
 0.809
ADQ03661.1
PFAM: Protein of unknown function YycH; KEGG: ate:Athe_0084 hypothetical protein.
  
     0.744
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
    0.681
ADQ03973.1
KEGG: ate:Athe_0532 hypothetical protein.
  
     0.662
ADQ04665.1
KEGG: ate:Athe_1311 hypothetical protein.
  
     0.639
ADQ05098.1
PFAM: glycosyl transferase family 2; KEGG: ate:Athe_1807 glycosyl transferase family 2.
   
 0.609
ADQ05692.1
PFAM: ABC-2 type transporter; KEGG: csc:Csac_0514 ABC-2 type transporter.
  
     0.590
ADQ05582.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_2342 S-layer domain protein.
  
     0.564
ADQ03643.1
PFAM: O-antigen polymerase; KEGG: ate:Athe_0051 O-antigen polymerase.
 
     0.562
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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