Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ04008.1KEGG: ate:Athe_0560 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SH3 type 3 domain protein; SMART: Peptidoglycan-binding LysM. (507 aa)    
Predicted Functional Partners:
ADQ03983.1
KEGG: ate:Athe_0542 hypothetical protein.
 
   
 0.664
ADQ04709.1
KEGG: csc:Csac_1917 hypothetical protein.
  
     0.628
ADQ03982.1
KEGG: ate:Athe_0541 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.
 
   
 0.625
ADQ04368.1
KEGG: ate:Athe_1013 hypothetical protein.
  
     0.604
ADQ05747.1
PFAM: Colicin V production protein; KEGG: ate:Athe_2747 hypothetical protein.
 
    0.604
ADQ05386.1
PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ate:Athe_2167 flagellar hook-length control protein.
  
    0.593
ADQ05582.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_2342 S-layer domain protein.
  
     0.590
ADQ04300.1
KEGG: csc:Csac_1472 hypothetical protein.
  
     0.585
ADQ03984.1
KEGG: ate:Athe_0543 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.
 
   
 0.577
ADQ04302.1
KEGG: csc:Csac_1472 hypothetical protein.
  
     0.575
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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