Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADQ04035.1PFAM: helix-turn-helix domain protein; KEGG: ate:Athe_0586 hypothetical protein. (174 aa)    
Predicted Functional Partners:
ADQ04036.1
KEGG: ate:Athe_0587 hypothetical protein.
 
     0.943
ADQ04869.1
KEGG: ate:Athe_1536 hypothetical protein.
  
     0.742
ADQ04037.1
KEGG: ate:Athe_0588 hypothetical protein.
       0.646
ADQ04795.1
KEGG: ate:Athe_1458 hypothetical protein.
  
     0.611
ADQ04714.1
KEGG: ate:Athe_1362 hypothetical protein.
  
     0.586
ADQ04034.1
PFAM: phosphoribosyltransferase; KEGG: ate:Athe_0585 phosphoribosyltransferase.
       0.529
ADQ05729.1
KEGG: ate:Athe_2729 hypothetical protein.
  
     0.441
ADQ05232.1
KEGG: ate:Athe_1972 hypothetical protein.
  
     0.411
ADQ04033.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: ate:Athe_0584 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
       0.407
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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