STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04082.1PFAM: Radical SAM domain protein; KEGG: ate:Athe_0623 radical SAM domain protein. (453 aa)    
Predicted Functional Partners:
ADQ04081.1
KEGG: ate:Athe_0622 hypothetical protein.
 
 
   0.981
ADQ04083.1
KEGG: ate:Athe_0624 carbonic anhydrase.
       0.817
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.621
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.621
ADQ03954.1
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ate:Athe_0511 Orn/Lys/Arg decarboxylase major region.
 
     0.590
ADQ04582.1
KEGG: ate:Athe_1228 hypothetical protein.
  
     0.523
ADQ04868.1
PFAM: Domain of unknown function DUF1858; KEGG: ate:Athe_1535 domain of unknown function DUF1858.
  
     0.489
ADQ05270.1
SMART: AAA ATPase; KEGG: ate:Athe_2046 AAA ATPase.
  
     0.486
ADQ04833.1
PFAM: Aluminium resistance family protein; KEGG: ate:Athe_1496 aluminium resistance family protein.
  
     0.485
ADQ04916.1
PFAM: protein of unknown function DUF633; KEGG: ate:Athe_1620 protein of unknown function DUF633.
  
     0.463
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.