Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADQ04132.1PFAM: protein of unknown function DUF107; KEGG: ate:Athe_0690 protein of unknown function DUF107. (146 aa)    
Predicted Functional Partners:
ADQ04133.1
KEGG: ate:Athe_0691 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein.
  
 
 0.902
ADQ04131.1
KEGG: ate:Athe_0689 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1.
       0.715
ADQ03688.1
PFAM: band 7 protein; KEGG: ate:Athe_0142 band 7 protein.
  
  
 0.705
ADQ04134.1
KEGG: ate:Athe_0692 protein of unknown function DUF964; Belongs to the UPF0342 family.
       0.619
ADQ04130.1
KEGG: ate:Athe_0688 hypothetical protein.
       0.589
ADQ04135.1
PFAM: protein of unknown function UPF0182; KEGG: ate:Athe_0693 protein of unknown function UPF0182.
       0.536
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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