STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04221.1Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: ate:Athe_0799 putative transcriptional regulator. (374 aa)    
Predicted Functional Partners:
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
    
  0.900
ADQ04220.1
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ate:Athe_0798 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
       0.782
ADQ04219.1
PFAM: Peptidase M23; KEGG: ate:Athe_0797 hypothetical protein.
       0.718
ADQ04222.1
KEGG: ate:Athe_0800 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; Tetratricopeptide TPR_3 repeat-containing protein; SMART: Tetratricopeptide repeat.
  
    0.716
ADQ05555.1
PFAM: SMC domain protein; KEGG: tit:Thit_1894 SMC domain protein.
 
    0.711
ADQ05556.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.693
ADQ05557.1
PFAM: restriction modification system DNA specificity domain; KEGG: gyc:GYMC61_0287 restriction modification system DNA specificity domain protein.
  
    0.669
ADQ03982.1
KEGG: ate:Athe_0541 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.
  
     0.620
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.606
ADQ03984.1
KEGG: ate:Athe_0543 spore coat protein, CotS family; TIGRFAM: spore coat protein, CotS family; PFAM: aminoglycoside phosphotransferase.
  
     0.603
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.