Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04240.1KEGG: ate:Athe_0817 hypothetical protein. (190 aa)    
Predicted Functional Partners:
ADQ05223.1
KEGG: ate:Athe_1954 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
   
 0.752
ADQ05224.1
KEGG: ate:Athe_1955 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.725
ADQ05727.1
KEGG: ate:Athe_2727 hypothetical protein.
  
     0.699
ADQ05369.1
PFAM: type IV pilus assembly PilZ; KEGG: ate:Athe_2150 type IV pilus assembly PilZ.
  
     0.695
ADQ04351.1
KEGG: ate:Athe_0997 hypothetical protein.
  
   
 0.667
ADQ04964.1
PFAM: FlgN family protein; KEGG: ate:Athe_1676 FlgN family protein.
  
     0.666
ADQ05088.1
SMART: PDZ/DHR/GLGF domain protein; KEGG: ate:Athe_1797 PDZ/DHR/GLGF domain protein.
  
     0.652
ADQ05645.1
KEGG: ate:Athe_2402 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
     0.641
ADQ04925.1
KEGG: ate:Athe_1629 hypothetical protein.
  
     0.634
ADQ04239.1
PFAM: protein of unknown function DUF28; KEGG: ate:Athe_0816 protein of unknown function DUF28.
       0.599
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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