Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
ADQ04349.1PFAM: Sporulation stage III protein AF; KEGG: ate:Athe_0995 hypothetical protein. (164 aa)    
Predicted Functional Partners:
ADQ04347.1
TIGRFAM: stage III sporulation protein AD; KEGG: ate:Athe_0993 hypothetical protein.
  
  
 0.991
ADQ04348.1
PFAM: Sporulation stage III protein AE; KEGG: ate:Athe_0994 hypothetical protein.
  
  
 0.990
ADQ04350.1
KEGG: ate:Athe_0996 hypothetical protein.
  
  
 0.983
ADQ04351.1
KEGG: ate:Athe_0997 hypothetical protein.
  
  
 0.944
ADQ04346.1
TIGRFAM: stage III sporulation protein AC; KEGG: ate:Athe_0992 stage III sporulation protein AC.
  
  
 0.941
ADQ04344.1
SMART: AAA ATPase; KEGG: ate:Athe_0990 AAA ATPase.
  
  
 0.841
ADQ04352.1
PFAM: protein of unknown function DUF322; KEGG: ate:Athe_0998 protein of unknown function DUF322.
  
    0.640
ADQ04345.1
PFAM: Sporulation stage III protein AB; KEGG: ate:Athe_0991 hypothetical protein.
       0.628
ADQ04353.1
KEGG: ate:Athe_0999 hypothetical protein.
  
    0.553
ADQ04354.1
PFAM: Protein of unknown function DUF2273; KEGG: ate:Athe_1000 hypothetical protein.
       0.541
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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