Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADQ04368.1KEGG: ate:Athe_1013 hypothetical protein. (126 aa)    
Predicted Functional Partners:
ADQ04367.1
PFAM: protein of unknown function DUF421; KEGG: ate:Athe_1012 protein of unknown function DUF421.
 
     0.881
ADQ04370.1
KEGG: ate:Athe_1015 CoA-binding domain protein; manually curated; PFAM: CoA-binding domain protein.
 
     0.626
ADQ04008.1
KEGG: ate:Athe_0560 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SH3 type 3 domain protein; SMART: Peptidoglycan-binding LysM.
  
     0.604
ADQ04366.1
KEGG: ate:Athe_1011 hypothetical protein.
       0.587
ADQ04365.1
Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.586
ADQ05235.1
PFAM: Coat F domain protein; KEGG: ate:Athe_1976 coat F domain protein.
  
    0.584
ADQ04618.1
KEGG: csc:Csac_1829 hypothetical protein.
  
     0.582
ADQ05602.1
PFAM: sodium/calcium exchanger membrane region; KEGG: ate:Athe_2364 sodium/calcium exchanger membrane region.
  
    0.582
ADQ05223.1
KEGG: ate:Athe_1954 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
    0.581
ADQ04302.1
KEGG: csc:Csac_1472 hypothetical protein.
  
     0.577
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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