STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04377.1Helix-turn-helix domain protein; KEGG: chy:CHY_1696 prophage LambdaCh01, PBSX family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (84 aa)    
Predicted Functional Partners:
ADQ04378.1
Helix-turn-helix domain protein; KEGG: chy:CHY_1694 putative prophage LambdaCh01, transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
  
 0.731
ADQ04379.1
Prophage antirepressor; PFAM: BRO domain protein; phage antirepressor protein; KEGG: gka:GK0519 phage associated-antirepressor.
 
     0.719
ADQ04380.1
KEGG: dae:Dtox_3699 hypothetical protein; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Peptidoglycan-binding lysin domain.
       0.648
ADQ04376.1
Transcriptional regulator, XRE family; KEGG: afl:Aflv_0637 SOS-response transcriptional repressor LexA (HTH, RecA-mediated autopeptidase); PFAM: helix-turn-helix domain protein; Peptidase S24/S26A/S26B, conserved region; SMART: helix-turn-helix domain protein.
       0.525
ADQ04381.1
KEGG: tva:TVAG_308080 hypothetical protein.
       0.517
ADQ04375.1
PFAM: restriction endonuclease; KEGG: cph:Cpha266_1614 restriction endonuclease.
       0.487
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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