Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04385.1KEGG: aoe:Clos_1293 hypothetical protein. (274 aa)    
Predicted Functional Partners:
ADQ04384.1
KEGG: cth:Cthe_2464 hypothetical protein.
 
    0.833
ADQ04382.1
KEGG: pgu:PGUG_04397 hypothetical protein.
       0.737
ADQ04383.1
Hypothetical protein; KEGG: gtn:GTNG_1712 respiratory nitrate reductase alpha subunit.
       0.737
ADQ04386.1
Hypothetical protein; KEGG: lsp:Bsph_1775 phage replication protein.
 
     0.547
ADQ04381.1
KEGG: tva:TVAG_308080 hypothetical protein.
       0.498
ADQ04387.1
AAA ATPase; KEGG: tit:Thit_1404 AAA ATPase; manually curated; SMART: AAA ATPase.
       0.477
ADQ04388.1
KEGG: drm:Dred_2612 hypothetical protein.
       0.432
ADQ04389.1
Hypothetical protein.
       0.432
ADQ04390.1
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.432
ADQ04379.1
Prophage antirepressor; PFAM: BRO domain protein; phage antirepressor protein; KEGG: gka:GK0519 phage associated-antirepressor.
  
    0.416
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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