STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04392.1Hypothetical protein; Manually curated; KEGG: cbi:CLJ_B0158 cyanophycin synthetase. (57 aa)    
Predicted Functional Partners:
ADQ04391.1
PFAM: endodeoxyribonuclease RusA; KEGG: ate:Athe_2445 endodeoxyribonuclease RusA.
       0.773
ADQ04388.1
KEGG: drm:Dred_2612 hypothetical protein.
       0.737
ADQ04389.1
Hypothetical protein.
       0.737
ADQ04390.1
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.737
ADQ04393.1
TIGRFAM: phage transcriptional regulator, RinA family; KEGG: chy:CHY_1683 prophage LambdaCh01, RinA family protein protein phage transcriptional regulator.
       0.705
ADQ04386.1
Hypothetical protein; KEGG: lsp:Bsph_1775 phage replication protein.
       0.657
ADQ04387.1
AAA ATPase; KEGG: tit:Thit_1404 AAA ATPase; manually curated; SMART: AAA ATPase.
       0.657
ADQ04394.1
KEGG: csc:Csac_0574 hypothetical protein.
       0.438
ADQ04395.1
TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: ctc:CTC01086 phage terminase large subunit.
       0.438
ADQ04396.1
KEGG: prophage LambdaCh01, portal protein.
       0.438
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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