Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04399.1KEGG: hypothetical protein. (113 aa)    
Predicted Functional Partners:
ADQ04398.1
KEGG: hypothetical protein.
       0.584
ADQ04397.1
PFAM: minor capsid 2 protein; KEGG: minor capsid 2 protein.
       0.576
ADQ04394.1
KEGG: csc:Csac_0574 hypothetical protein.
       0.541
ADQ04395.1
TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: ctc:CTC01086 phage terminase large subunit.
       0.541
ADQ04396.1
KEGG: prophage LambdaCh01, portal protein.
       0.541
ADQ04400.1
KEGG: chy:CHY_1672 putative prophage LambdaCh01, scaffold protein.
       0.535
ADQ04401.1
KEGG: hau:Haur_0657 hypothetical protein.
       0.478
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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