STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04412.1KEGG: ctc:CTC_p55 putative N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; N-acetylmuramoyl-L-alanine amidase family 2. (147 aa)    
Predicted Functional Partners:
ADQ04411.1
Hypothetical protein; KEGG: ctc:pE88_04 UviB homologous protein.
       0.785
ADQ04413.1
Phage holin, LL-H family; KEGG: tte:TTE2423 hypothetical protein; TIGRFAM: phage holin, LL-H family; PFAM: holin LL-H.
       0.732
ADQ04408.1
TIGRFAM: phage tape measure protein; KEGG: pth:PTH_2178 endoglucanase Y.
       0.476
ADQ05237.1
PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: ate:Athe_1978 ErfK/YbiS/YcfS/YnhG family protein.
 
   
 0.461
ADQ04409.1
KEGG: gka:GK0545 hypothetical protein.
       0.444
ADQ04410.1
PFAM: Kelch repeat type 1-containing protein; KEGG: cin:100179922 similar to Kelch-like protein 12 (CUL3-interacting protein 1).
       0.444
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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