STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04518.1KEGG: ate:Athe_1139 hypothetical protein. (197 aa)    
Predicted Functional Partners:
ADQ04519.1
KEGG: ate:Athe_1140 protein of unknown function DUF87.
 
     0.951
ADQ04517.1
PFAM: NurA domain; KEGG: ate:Athe_1138 hypothetical protein.
 
     0.944
ADQ04521.1
PFAM: SMC domain protein; KEGG: ate:Athe_1142 SMC domain protein.
 
     0.912
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.893
ADQ05582.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_2342 S-layer domain protein.
  
     0.722
ADQ03645.1
KEGG: csc:Csac_2571 hypothetical protein.
  
     0.721
ADQ03873.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_0438 S-layer domain protein.
  
     0.721
ADQ05212.1
PFAM: Fibronectin type III domain protein; KEGG: ate:Athe_1944 fibronectin type III domain protein.
  
     0.719
ADQ04160.1
KEGG: ate:Athe_0715 hypothetical protein.
  
     0.706
ADQ05607.1
KEGG: ate:Athe_2369 hypothetical protein.
  
     0.688
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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