STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04590.1KEGG: ate:Athe_1236 lipopolysaccharide biosynthesis protein. (262 aa)    
Predicted Functional Partners:
ADQ04589.1
KEGG: ate:Athe_1235 beta-lactamase domain protein.
       0.726
ADQ04591.1
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: ate:Athe_1237 glutamine--scyllo-inositol transaminase.
       0.637
ADQ04592.1
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: ate:Athe_1238 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
       0.637
ADQ04588.1
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ate:Athe_1234 electron transfer flavoprotein alpha subunit.
       0.627
ADQ04593.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ate:Athe_1239 oxidoreductase domain protein.
       0.555
ADQ04594.1
KEGG: ate:Athe_1240 hexapaptide repeat-containing transferase.
       0.555
ADQ04596.1
KEGG: ate:Athe_1242 hypothetical protein.
       0.555
ADQ04597.1
PFAM: glycosyl transferase group 1; KEGG: ate:Athe_1243 glycosyl transferase group 1.
       0.555
ADQ04595.1
KEGG: ate:Athe_1241 hypothetical protein.
       0.552
ADQ04587.1
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ate:Athe_1233 electron transfer flavoprotein alpha/beta-subunit.
       0.529
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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