STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04623.1KEGG: ate:Athe_1269 GatB/YqeY domain-containing protein. (153 aa)    
Predicted Functional Partners:
rpsU
KEGG: csc:Csac_1833 ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.969
ADQ04624.1
KEGG: ate:Athe_1270 sporulation protein YqfC.
       0.627
ADQ04625.1
PFAM: stage IV sporulation YqfD; KEGG: ate:Athe_1271 hypothetical protein.
       0.627
ADQ04626.1
PFAM: PhoH family protein; K Homology, type 1, subgroup; KEGG: ate:Athe_1272 PhoH family protein.
       0.596
ADQ04627.1
7TM receptor with intracellular metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; KEGG: ate:Athe_1273 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region.
       0.596
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.596
ADQ04629.1
PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; KEGG: ate:Athe_1275 diacylglycerol kinase.
       0.596
ADQ04621.1
PFAM: thioesterase superfamily protein; KEGG: ate:Athe_1267 thioesterase superfamily protein.
       0.505
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
    0.494
ADQ04630.1
KEGG: ate:Athe_1276 hypothetical protein.
       0.475
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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