Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ04917.1KEGG: ate:Athe_1621 hypothetical protein. (50 aa)    
Predicted Functional Partners:
ADQ04915.1
PFAM: protein of unknown function DUF34; KEGG: ate:Athe_1619 protein of unknown function DUF34; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.545
ADQ04916.1
PFAM: protein of unknown function DUF633; KEGG: ate:Athe_1620 protein of unknown function DUF633.
       0.545
ADQ04913.1
PFAM: ABC-1 domain-containing protein; aminoglycoside phosphotransferase; KEGG: ate:Athe_1617 ABC-1 domain protein.
       0.457
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.457
ADQ04912.1
KEGG: ate:Athe_1616 hypothetical protein.
       0.429
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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