Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADQ04925.1KEGG: ate:Athe_1629 hypothetical protein. (66 aa)    
Predicted Functional Partners:
ADQ04926.1
KEGG: ate:Athe_1630 methyl-accepting chemotaxis sensory transducer; PFAM: Heme NO binding domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
 
     0.867
ADQ04927.1
KEGG: ate:Athe_1631 hypothetical protein.
 
     0.738
ADQ05223.1
KEGG: ate:Athe_1954 germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein.
  
     0.681
ADQ04240.1
KEGG: ate:Athe_0817 hypothetical protein.
  
     0.634
ADQ05224.1
KEGG: ate:Athe_1955 spore germination protein; TIGRFAM: spore germination protein; PFAM: Spore germination protein.
  
     0.605
ADQ04709.1
KEGG: csc:Csac_1917 hypothetical protein.
  
     0.599
ADQ04928.1
PFAM: Lytic transglycosylase catalytic; KEGG: ate:Athe_1632 lytic transglycosylase catalytic.
       0.584
ADQ04354.1
PFAM: Protein of unknown function DUF2273; KEGG: ate:Athe_1000 hypothetical protein.
  
     0.549
ADQ04924.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ate:Athe_1628 protein of unknown function DUF6 transmembrane.
       0.542
ADQ04008.1
KEGG: ate:Athe_0560 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SH3 type 3 domain protein; SMART: Peptidoglycan-binding LysM.
  
     0.488
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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