Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADQ04927.1KEGG: ate:Athe_1631 hypothetical protein. (84 aa)    
Predicted Functional Partners:
ADQ05163.1
PFAM: PemK family protein; KEGG: ate:Athe_1901 transcriptional modulator of MazE/toxin, MazF.
  
 
 0.902
ADQ04925.1
KEGG: ate:Athe_1629 hypothetical protein.
 
     0.738
ADQ04926.1
KEGG: ate:Athe_1630 methyl-accepting chemotaxis sensory transducer; PFAM: Heme NO binding domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer.
       0.705
ADQ04928.1
PFAM: Lytic transglycosylase catalytic; KEGG: ate:Athe_1632 lytic transglycosylase catalytic.
       0.654
ADQ04929.1
KEGG: ate:Athe_1633 hypothetical protein.
       0.521
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.517
ADQ04924.1
PFAM: protein of unknown function DUF6 transmembrane; KEGG: ate:Athe_1628 protein of unknown function DUF6 transmembrane.
       0.493
ADQ05162.1
KEGG: ate:Athe_1900 hypothetical protein.
 
     0.436
ADQ04923.1
KEGG: ate:Athe_1627 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
  
 0.411
ADQ05516.1
PFAM: S-layer domain-containing protein; KEGG: ate:Athe_2303 S-layer domain protein.
  
     0.402
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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