Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADQ04992.1KEGG: csc:Csac_2243 hypothetical protein. (138 aa)    
Predicted Functional Partners:
ADQ04991.1
KEGG: ate:Athe_1702 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
       0.781
ADQ04993.1
KEGG: ate:Athe_1704 hypothetical protein.
       0.781
ADQ04994.1
KEGG: ate:Athe_1705 hypothetical protein.
       0.735
ADQ04995.1
KEGG: csc:Csac_2246 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.735
ADQ04996.1
KEGG: csc:Csac_2247 hypothetical protein.
       0.735
ADQ04990.1
KEGG: ate:Athe_1701 hypothetical protein.
       0.509
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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