Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ04995.1KEGG: csc:Csac_2246 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (312 aa)    
Predicted Functional Partners:
ADQ04996.1
KEGG: csc:Csac_2247 hypothetical protein.
 
 
 0.945
ADQ04994.1
KEGG: ate:Athe_1705 hypothetical protein.
 
    0.867
ADQ04991.1
KEGG: ate:Athe_1702 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
 
    0.773
ADQ04993.1
KEGG: ate:Athe_1704 hypothetical protein.
  
    0.766
ADQ04992.1
KEGG: csc:Csac_2243 hypothetical protein.
       0.735
ADQ05605.1
KEGG: csc:Csac_0365 hypothetical protein.
 
 
 0.672
ADQ05587.1
Hypothetical protein; Manually curated; KEGG: ate:Athe_2347 hypothetical protein.
 
 
 0.664
ADQ04249.1
KEGG: ate:Athe_0826 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
   
 0.649
ADQ05693.1
PFAM: ABC-2 type transporter; KEGG: ate:Athe_2625 ABC-2 type transporter.
 
  
 0.603
ADQ05592.1
KEGG: ate:Athe_2352 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
  
 0.571
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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