STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ05050.1PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: ate:Athe_1761 2-alkenal reductase. (370 aa)    
Predicted Functional Partners:
ADQ04791.1
PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: ate:Athe_1454 2-alkenal reductase; SMART: PDZ/DHR/GLGF domain protein.
  
  
 
0.925
ADQ03919.1
Carbohydrate kinase, FGGY-like protein; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.717
ADQ05051.1
KEGG: ate:Athe_1762 hypothetical protein.
       0.652
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
   0.548
ADQ05049.1
KEGG: csc:Csac_2306 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.491
ADQ05048.1
PFAM: protein of unknown function DUF156; KEGG: ate:Athe_1759 protein of unknown function DUF156.
       0.487
ADQ05425.1
KEGG: ate:Athe_2210 protein of unknown function DUF81; manually curated; PFAM: protein of unknown function DUF81.
    
 
 0.470
rplY
Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
   0.463
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.448
rpsP
KEGG: csc:Csac_2157 ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
 
   0.424
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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