Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADQ05053.1KEGG: ate:Athe_1764 TrpR like protein, YerC/YecD; TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor. (103 aa)    
Predicted Functional Partners:
ADQ05052.1
rRNA (guanine-N(2)-)-methyltransferase; KEGG: ate:Athe_1763 putative RNA methylase; PFAM: RNA methylase.
       0.782
ADQ05054.1
PFAM: Sporulation protein YtxC; KEGG: ate:Athe_1765 sporulation protein YtxC.
       0.523
ADQ04630.1
KEGG: ate:Athe_1276 hypothetical protein.
 
    0.502
ADQ03834.1
PFAM: YbbR family protein; KEGG: ate:Athe_0362 YbbR family protein.
 
     0.470
ADQ04531.1
PFAM: regulatory protein DeoR; KEGG: ate:Athe_1152 fatty acid biosynthesis protein; transcriptional regulator.
  
     0.460
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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